Cd recovery toolbox 1.1.16 portable
Factor bug Updated namespace to pull in mgcv and nlme package functionality issues CMD check still takes too long ( 5 minutes probably due to differential swishmax 4 with serial expression testing in underlying package.
Added statidentity to expressionBarplot to comply with ggplot.9.3 enforcement.
Result is rendered as a wordle.
O cbind and respect derived classes o "ranges" method for GRangesList objects should not propagate inner metadata columns by default.Changes in version.99.4: First version of package contains functions to perform swan normalisation and differential variability analysis for DNA methylation data from Illuminas Infinium HumanMethylation450 beadchip.Logistic can now handle imputed genotypes.Allows for visualization of relative isoform, CDS, and promoter usage proportions as a pie chart by condition (or optionally as stacked bar charts by adding coord_cartesian ).TestDAU the counts function returned NA for letters that were missing in a given matrix; that lead to NaNs in the background matrix and to errors during dagLogo plotting.Changes in version.99.2: NEW features Updated/added documentation.PepStat - Statistical analysis of peptide microarrays pepxmltab - Parsing pepXML files based one XML package.Teqc Changes in version.5.4: bug fix.coverage.Finally, GO terms are scored by averaging the rank (alternatively, score) of their respective gene sets to cluster the samples.Hist: coverage outlier values are removed from the histogram if outlinefalse, but cumulative base fractions are now still calculated based on the complete coverage data (affects the orange line in the coverage histogram, the values in the sensitivity.Derfinder - Fast differential expression analysis of RNA-seq data at base-pair resolution derfinderHelper - Helper package for speeding up the derfinder package when using multiple cores.Apart from an efficient implementation of standard position-independent functionality, the kernels are extended in a novel way to take the position of patterns into account for the similarity measure.It no longer has a col argument, which instead is handled.
ShinyMethyl - Interactive tool for visualizing Illuminas 450k array data SigCheck - While gene signatures are frequently used to classify data (e.g.
General updates Updated man pages GO_analyse to allow only one example to be run.
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